MACS3.Commands.callpeak_cmd module

Description: MACS 3 call peak main executable

This code is free software; you can redistribute it and/or modify it under the terms of the BSD License (see the file LICENSE included with the distribution).

MACS3.Commands.callpeak_cmd.cal_max_dup_tags(genome_size, tags_number, p=1e-05)

Calculate the maximum duplicated tag number based on genome size, total tag number and a p-value based on binomial distribution. Brute force algorithm to calculate reverse CDF no more than MAX_LAMBDA(100000).

MACS3.Commands.callpeak_cmd.check_names(treat, control, error_stream)

check common chromosome names

MACS3.Commands.callpeak_cmd.load_frag_files_options(options)

From the options, load treatment fragments and control fragments (if available).

MACS3.Commands.callpeak_cmd.load_tag_files_options(options)

From the options, load treatment tags and control tags (if available).

MACS3.Commands.callpeak_cmd.run(args)

The Main function/pipeline for MACS.