File Formats

This document the formats and examples of all the input and output files used in MACS3.

• callpeak output XLS format
  • Header lines
  • Content of peak calls
• SAM/BAM/BAMPE format
  • Filtering Criteria
• BED format
• BEDPE format
• FRAG format
• bedGraph format
• narrowPeak format
• broadPeak format
• gappedPeak format
• VCF format
• hmmratac HMM model json file format