MACS3.Commands.callvar_cmd module

Description: Call variants directly

Copyright (c) 2017-2023 Tao Liu <vladimir.liu@gmail.com>

This code is free software; you can redistribute it and/or modify it under the terms of the BSD License (see the file COPYING included with the distribution).

@status: release candidate @version: $Id$ @author: Tao Liu @contact: vladimir.liu@gmail.com

MACS3.Commands.callvar_cmd.call_variants_at_range(lr, s, collection, top2allelesminr, max_allowed_ar, min_altallele_count, min_homo_GQ, min_heter_GQ, minQ)

MACS3.Commands.callvar_cmd.check_names(treat, control, error_stream)

check common chromosome names

MACS3.Commands.callvar_cmd.run(args)

The Main function/pipeline for MACS