MACS3.Commands.hmmratac_cmd module

Description: Main HMMR command

This code is free software; you can redistribute it and/or modify it under the terms of the BSD License (see the file LICENSE included with the distribution).

MACS3.Commands.hmmratac_cmd.generate_states_path(predicted_proba_file, binsize, i_open, i_nuc, i_bg)

MACS3.Commands.hmmratac_cmd.run(args)

The HMMRATAC function/pipeline for MACS.

MACS3.Commands.hmmratac_cmd.save_accessible_regions(states_path, accessible_region_file, openregion_minlen, bdgscore)

MACS3.Commands.hmmratac_cmd.save_proba_to_bedGraph(predicted_proba_file, binsize, open_state_bdg_file, nuc_state_bdg_file, bg_state_bdg_file, i_open, i_nuc, i_bg)

MACS3.Commands.hmmratac_cmd.save_states_bed(states_path, states_bedfile)