MACS3.Commands.pileup_cmd module

Description: Pileup alignment files

This code is free software; you can redistribute it and/or modify it under the terms of the BSD License (see the file LICENSE included with the distribution).

MACS3.Commands.pileup_cmd.load_frag_files_options(options)

From the options, load treatment fragments and control fragments (if available).

MACS3.Commands.pileup_cmd.load_tag_files_options(options)

From the options, load alignment tags.

MACS3.Commands.pileup_cmd.run(o_options)

The Main function/pipeline for duplication filter.