MACS3.Signal.PeakDetect module

Module Description: Detect peaks, main module

This code is free software; you can redistribute it and/or modify it under the terms of the BSD License (see the file LICENSE included with the distribution).

class MACS3.Signal.PeakDetect.PeakDetect(opt=None, treat=None, control=None, d=None, maxgap=None, minlen=None, slocal=None, llocal=None)

Bases: object

Class to do the peak calling.

call_peaks()

Call peaks function.

Scan the whole genome for peaks. RESULTS WILL BE SAVED IN self.final_peaks and self.final_negative_peaks.

MACS3.Signal.PeakDetect.subpeak_letters(i)

Return type:

bytes