MACS3.Signal.PeakVariants module

Module for SAPPER PeakVariants class.

This code is free software; you can redistribute it and/or modify it under the terms of the BSD License (see the file COPYING included with the distribution).

class MACS3.Signal.PeakVariants.PeakVariants

Bases: object

add_variant(p, v)

fix_indels()

get_refer_biased_01s()

has_indel()

has_refer_biased_01()

n_variants()

remove_variant(p)

replace_variant(p, v)

toVCF()

class MACS3.Signal.PeakVariants.Variant

Bases: object

is_indel()

is_only_del()

is_only_insertion()

is_refer_biased_01(ar=0.85)

toVCF()

top1isreference()

top2isreference()