MACS3.Signal.Region module

Region class

class MACS3.Signal.Region.Regions

Bases: object

For plain region of chrom, start and end

add_loc(chrom, start, end)

exclude(regions_object2)

Remove overlapping regions in regions_object2, another Regions object. This regions object will be altered.

expand(flanking)

Expand regions to both directions with ‘flanking’ bps.

get_chr_names()

Return type:

set

init_from_PeakIO(peaks)

Initialize the object with a PeakIO object.

Note: I intentionally forgot to check if peakio is actually a PeakIO…

intersect(regions_object2)

Get the only intersecting regions comparing with regions_object2, another Regions object. Then return a new Regions object.

merge_overlap()

Merge overlapping regions of itself.

pop(n)

regions = None

sort()

total = None

total_length()

Return the total length of the Regions object.

Return type:

typedef

write_to_bed(fhd)

MACS3.Signal.Region.bool(*args, **kwargs)