MACS3.Signal.UnitigRACollection module

All Parser classes

class MACS3.Signal.UnitigRACollection.UnitigCollection

Bases: object

A collection of ReadAlignment objects and the corresponding PeakIO.

get_PosReadsInfo_ref_pos(ref_pos, ref_nt, Q=20)

Generate a PosReadsInfo for: object a given reference genome position.

Return a PosReadsInfo object.

sort()

Sort RAs according to lpos. Should be used after realignment.

class MACS3.Signal.UnitigRACollection.UnitigRAs

Bases: object

get_variant_bq_by_ref_pos(ref_pos)

return (s, bq_list_t, bq_list_c, strand_list_t, strand_list_c)